PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G031800.2
Common NameB456_010G031800, LOC105773833
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 248aa    MW: 28371.8 Da    PI: 4.4321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G031800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-11165208654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y k+L
  Gorai.010G031800.2 165 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 208
                         589*********************66......**************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.13E-5157220No hitNo description
SuperFamilySSF474592.09E-15159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8165208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-15166226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEINEESFLE ELLALRRENW DTVPTQMNEV FSNGWNFDCF DDMNLSTSLF PTTFCHEFST  60
ALPLEQDLGY FNGVYCPFGD EFSAPQLTDS SNNTFDTPPP FPNMLEEEES GFLADELNKL  120
DVQVPCKAEP FQSPEAPVFN NEAAACLDRK NRGKKMEGQQ PSKNLMAERR RRKRLNDRLS  180
MLRSIVPKIS KMDRTSILGD TIDYTKELLE RIKSLQQETE TDSNELNMAH IFKGGKSNEI  240
FVRNTPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167174ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451444.10.0PREDICTED: transcription factor bHLH93-like
TrEMBLA0A0D2R1900.0A0A0D2R190_G
TrEMBLA0A0D2SLV00.0A0A0D2SLV0_G
STRINGPOPTR_0002s10910.12e-88(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.22e-29beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]